Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_1111TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: sit:TM1040_0338 NCS1 nucleoside transporter family. (494 aa)    
Predicted Functional Partners:
Pden_1112
KEGG: rsp:RSP_0183 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase.
 
  
 0.862
Pden_1113
KEGG: sit:TM1040_1498 amidase, hydantoinase/carbamoylase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20.
 
  
 0.680
Pden_1120
PFAM: luciferase family protein; KEGG: cps:CPS_4043 methylenetetrahydromethanopterin reductase.
 
     0.629
Pden_1110
PFAM: protein of unknown function DUF1330; KEGG: mes:Meso_0684 protein of unknown function DUF1330.
       0.608
Pden_0674
PFAM: Benzoate membrane transport protein; Xanthine/uracil/vitamin C permease; KEGG: sme:SMb20289 putative permease protein.
 
  
 0.519
Pden_1117
Phospholactate guanylyltransferase; PFAM: protein of unknown function DUF121; KEGG: cps:CPS_4046 hypothetical protein.
 
     0.503
Pden_1119
TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: cps:CPS_4044 NADPH-dependent F420 reductase.
 
     0.488
Pden_1114
FO synthase subunit 1; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cps:CPS_4049 radical SAM domain protein.
 
     0.455
Pden_3917
TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sme:SMc02512 putative permease transmembrane protein.
 
  
 0.439
Pden_1277
TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: sme:SMc02512 putative permease transmembrane protein.
 
  
 0.438
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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