STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_1113KEGG: sit:TM1040_1498 amidase, hydantoinase/carbamoylase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20. (416 aa)    
Predicted Functional Partners:
Pden_1112
KEGG: rsp:RSP_0183 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase.
 
 
 0.996
Pden_1719
PFAM: AMP-dependent synthetase and ligase; KEGG: bja:blr0509 malonyl-CoA synthase.
   
 
  0.802
Pden_1111
TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; KEGG: sit:TM1040_0338 NCS1 nucleoside transporter family.
 
  
 0.669
Pden_1254
PFAM: aldehyde dehydrogenase; KEGG: bxe:Bxe_A3401 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.601
Pden_2755
PFAM: aldehyde dehydrogenase; KEGG: rsp:RSP_1507 aldehyde dehydrogenase.
    
 0.601
Pden_3211
PFAM: aldehyde dehydrogenase; KEGG: rme:Rmet_1577 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.601
Pden_3228
PFAM: aldehyde dehydrogenase; KEGG: bur:Bcep18194_C7342 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.601
Pden_3260
PFAM: aldehyde dehydrogenase; KEGG: dra:DRA0126 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.601
Pden_3898
PFAM: aldehyde dehydrogenase; KEGG: mes:Meso_0313 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.601
Pden_4039
KEGG: rsp:RSP_0179 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components TauA.
 
    0.551
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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