STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_1572KEGG: vpa:VP2088 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase. (351 aa)    
Predicted Functional Partners:
Pden_1571
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_3052 binding-protein-dependent transport systems inner membrane component.
  
 0.970
Pden_1570
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_3051 binding-protein-dependent transport systems inner membrane component.
 
 
 0.964
Pden_1569
PFAM: extracellular solute-binding protein, family 5; KEGG: jan:Jann_3050 extracellular solute-binding protein, family 5.
 
  
 0.896
Pden_1250
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_0036 binding-protein-dependent transport systems inner membrane component.
  
 0.892
Pden_1669
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_1477 probable permease of ABC transporter.
  
 0.881
Pden_0237
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: psp:PSPPH_2784 dipeptide transport system permease protein DppC AGR_L_321.
  
 0.873
Pden_1326
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_3052 binding-protein-dependent transport systems inner membrane component.
  
 0.873
Pden_4283
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA0100 putative ABC transporter permease protein.
  
 0.863
Pden_3802
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpc:RPC_1196 binding-protein-dependent transport systems inner membrane component.
  
 0.850
Pden_1327
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_3051 binding-protein-dependent transport systems inner membrane component.
 
 
 0.849
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.