STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_1576KEGG: rsp:RSP_0584 lysyl-tRNA synthetase; TIGRFAM: lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class 1c. (530 aa)    
Predicted Functional Partners:
Pden_2258
PFAM: protein of unknown function DUF1013; KEGG: rsp:RSP_0714 hypothetical protein.
  
    0.770
Pden_1909
PFAM: protein of unknown function DUF1321; KEGG: rsp:RSP_2139 hypothetical protein.
  
     0.700
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.608
Pden_4084
Response regulator receiver protein; KEGG: mmr:Mmar10_0669 two component transcriptional regulator, winged helix family.
  
     0.601
Pden_1577
KEGG: rsp:RSP_0583 hypothetical protein.
       0.588
Pden_2786
PFAM: import inner membrane translocase, subunit Tim44; KEGG: jan:Jann_0191 import inner membrane translocase, subunit Tim44.
  
     0.545
Pden_1575
KEGG: sil:SPO0459 hypothetical protein.
       0.528
Pden_3737
KEGG: rde:RD1_2835 hypothetical protein; Belongs to the UPF0335 family.
  
     0.511
Pden_1828
PFAM: helicase domain protein; KEGG: rsp:RSP_2422 putative ATP-dependent helicase, MgpS.
  
     0.493
gltX1
glutamate--tRNA(Gln) ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
  
  
 0.484
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.