STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_1900PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsp:RSP_2180 ABC glycine betaine/L-proline transporter, inner membrane subunit. (283 aa)    
Predicted Functional Partners:
Pden_1901
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2179 ABC glycine betaine/L-proline tranporter, ATPase subunit, ProV.
 0.997
Pden_1899
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sme:SMc02737 putative glycine betaine-binding ABC transporter protein.
 
 0.994
Pden_0947
KEGG: ret:RHE_PF00412 probable amino acid ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.980
Pden_1193
KEGG: ret:RHE_PF00412 probable amino acid ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.980
Pden_3858
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_3057 ABC proline/glycine betaine transporter, ATPase subunit.
 0.980
Pden_2285
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: atc:AGR_L_470 hypothetical protein.
 
 0.975
Pden_0945
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sme:SMc02378 putative periplasmic binding transmembrane protein.
 
 0.921
Pden_0946
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02379 putative permease protein.
  
  
 
0.912
Pden_3857
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02379 putative permease protein.
  
  
 
0.912
Pden_3856
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: rsp:RSP_3059 ABC proline/glycine betaine transporter, periplasmic substrate-binding protein.
 
 0.907
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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