STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_1981PFAM: GCN5-related N-acetyltransferase; KEGG: rsp:RSP_0925 putative acetyl transferase. (239 aa)    
Predicted Functional Partners:
Pden_1980
PFAM: molybdopterin binding domain; KEGG: sit:TM1040_2467 molybdopterin binding domain.
       0.855
Pden_0427
KEGG: sil:SPO0311 hypothetical protein.
  
     0.754
Pden_1237
KEGG: sil:SPO0951 hypothetical protein.
  
     0.744
Pden_1821
KEGG: rsp:RSP_2983 hypothetical protein.
  
     0.740
Pden_3625
SMART: AAA ATPase; KEGG: jan:Jann_0847 ATPase.
  
    0.736
Pden_2217
KEGG: rsp:RSP_6009 hypothetical protein.
  
     0.717
Pden_2607
KEGG: rsp:RSP_1154 hypothetical protein.
  
     0.714
Pden_1741
KEGG: sit:TM1040_1503 conserved hypothetical protein.
  
     0.691
Pden_2716
KEGG: rsp:RSP_1098 hypothetical protein.
  
     0.679
Pden_2206
PFAM: protein of unknown function DUF1150; KEGG: rsp:RSP_1573 hypothetical protein.
  
     0.676
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.