Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_1995PFAM: HemY domain protein; KEGG: rsp:RSP_1508 uncharacterized HemY-like membrane protein. (596 aa)    
Predicted Functional Partners:
Pden_1996
KEGG: jan:Jann_4082 hypothetical protein.
 
     0.906
Pden_1997
Putative uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
     0.831
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.740
Pden_2795
KEGG: rsp:RSP_1525 putative helicase/exonuclease.
  
     0.736
Pden_3814
PFAM: Methyltransferase type 11; KEGG: rsp:RSP_2295 hypothetical protein.
  
     0.730
Pden_1881
PFAM: protein of unknown function DUF710; KEGG: rde:RD1_2980 hypothetical protein.
  
    0.726
Pden_4000
PFAM: outer membrane chaperone Skp (OmpH); KEGG: rde:RD1_2594 hypothetical protein.
  
     0.712
Pden_0431
KEGG: rsp:RSP_6127 hypothetical protein.
  
     0.701
Pden_2000
PFAM: YCII-related; KEGG: rsp:RSP_1511 hypothetical protein.
 
     0.697
Pden_0584
KEGG: sil:SPO1180 hypothetical protein.
  
     0.686
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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