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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2003PFAM: Allergen V5/Tpx-1 family protein; KEGG: fra:Francci3_3457 allergen V5/TPX-1 related. (140 aa)    
Predicted Functional Partners:
Pden_2580
PFAM: Allergen V5/Tpx-1 family protein; KEGG: rsp:RSP_1200 hypothetical protein.
  
     0.736
Pden_0950
Fervidolysin, Serine peptidase, MEROPS family S08A; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: bha:BH0684 prepro-alkaline protease.
  
   
 0.524
Pden_2004
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: sil:SPO3004 LysM/phospholipid-binding domain protein.
  
    0.476
Pden_0414
KEGG: rsp:RSP_0659 putative metallo-phosphoesterase.
  
    0.451
Pden_4314
PFAM: peptidase M16 domain protein; KEGG: rsp:RSP_1832 peptidase, M16 family; Belongs to the peptidase M16 family.
 
     0.429
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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