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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2004PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: sil:SPO3004 LysM/phospholipid-binding domain protein. (161 aa)    
Predicted Functional Partners:
Pden_1931
KEGG: rsp:RSP_6052 hypothetical protein.
   
   0.556
Pden_3610
PFAM: CsbD family protein; KEGG: rpb:RPB_1394 CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
  
 0.544
Pden_1920
PFAM: deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: rsp:RSP_4045 fructose-bisphosphate aldolase.
   
    0.512
Pden_0485
KEGG: noc:Noc_2738 transcriptional regulator, XRE family.
   
    0.510
Pden_1394
PFAM: protein of unknown function DUF883, ElaB; KEGG: rha:RHA1_ro00971 hypothetical protein.
  
  
 0.507
Pden_1634
PFAM: superoxide dismutase, copper/zinc binding; KEGG: ret:RHE_CH01400 superoxide dismutase protein.
  
  
 0.501
Pden_2005
PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_2255 acyl-CoA synthase.
  
    0.498
Pden_1767
PFAM: Ferritin, Dps family protein; KEGG: gbe:GbCGDNIH1_0685 ferroxidase; Belongs to the Dps family.
   
  
 0.492
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.489
Pden_3868
PFAM: protein of unknown function, zinc metallopeptidase putative; KEGG: sil:SPO3546 zinc metallopeptidase, putative.
 
     0.481
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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