Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_2005PFAM: AMP-dependent synthetase and ligase; KEGG: rsp:RSP_2255 acyl-CoA synthase. (629 aa)    
Predicted Functional Partners:
Pden_0836
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; KR; KEGG: sil:SPO0849 non-ribosomal peptide synthase.
  
 0.970
Pden_1242
KEGG: jan:Jann_2147 phosphopantetheine-binding.
 
 
 0.734
Pden_2511
KEGG: sil:SPO3336 hypothetical protein.
  
     0.635
Pden_2868
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rsp:RSP_2199 putative acyl-CoA dehydrogenase.
 
 
 0.625
Pden_0604
KEGG: sil:SPO1317 hypothetical protein.
  
     0.621
Pden_0434
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rsp:RSP_0742 probable acyl-CoA dehydrogenase.
 
 
 0.597
Pden_3224
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: abo:ABO_2098 acyl-CoA dehydrogenase.
 
 
 0.588
Pden_2742
KEGG: rsp:RSP_6107 hypothetical protein.
  
     0.571
Pden_0198
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mag:amb2599 acyl-CoA dehydrogenase.
  
 
 0.532
Pden_0714
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rde:RD1_3681 acyl-CoA dehydrogenase.
  
 
 0.532
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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