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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2007KEGG: sil:SPO3503 hypothetical protein. (335 aa)    
Predicted Functional Partners:
Pden_2006
KEGG: sit:TM1040_2837 conserved hypothetical protein.
 
     0.795
Pden_2292
KEGG: sit:TM1040_0020 conserved hypothetical protein.
  
     0.594
Pden_0835
KEGG: sit:TM1040_2399 membrane protein, putative.
  
     0.587
Pden_2242
KEGG: sil:SPO2775 hypothetical protein.
  
     0.563
Pden_0839
PFAM: 4'-phosphopantetheinyl transferase; KEGG: sma:SAV1748 phosphopantetheinyl transferase.
  
     0.560
Pden_2192
PFAM: glycosyl transferase, group 1; KEGG: mxa:MXAN_7445 glycosyl transferase, group 1 family protein.
  
     0.548
Pden_0836
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; KR; KEGG: sil:SPO0849 non-ribosomal peptide synthase.
  
     0.547
Pden_0838
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; formyl transferase domain protein; phosphopantetheine-binding; luciferase family protein; KEGG: sil:SPO0847 non-ribosomal peptide synthetase.
  
     0.529
Pden_3320
PFAM: von Willebrand factor, type A; KEGG: jan:Jann_1721 von Willebrand factor, type A.
  
     0.527
Pden_1322
KEGG: sil:SPO0459 hypothetical protein.
  
     0.522
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.