Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2011Hypothetical protein. (156 aa)    
Predicted Functional Partners:
Pden_2012
Hypothetical protein.
       0.777
Pden_2240
KEGG: jan:Jann_1184 lipoprotein, putative.
  
     0.719
Pden_1931
KEGG: rsp:RSP_6052 hypothetical protein.
  
     0.717
Pden_2394
Hypothetical protein; KEGG: ret:RHE_PB00165 plasmid replication protein RepCb.
  
     0.690
Pden_2218
PFAM: Sporulation domain protein; KEGG: rsp:RSP_6008 hypothetical protein.
  
     0.668
Pden_4338
KEGG: mes:Meso_2597 PE-PGRS family protein.
  
     0.659
Pden_1407
KEGG: rsp:RSP_2286 hypothetical protein.
  
     0.632
Pden_2135
KEGG: cel:ZK84.1 Hypothetical protein ZK84.1.
  
     0.631
Pden_2911
KEGG: rsp:RSP_1308 hypothetical protein.
  
     0.626
Pden_4337
KEGG: mes:Meso_2598 hypothetical protein.
  
     0.621
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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