Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_2013PFAM: ABC-2 type transporter; KEGG: sit:TM1040_2524 ABC-2 type transporter. (253 aa)    
Predicted Functional Partners:
Pden_2014
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: jan:Jann_0746 ABC transporter related.
  
 0.969
Pden_1855
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO3847 ABC transporter, ATP-binding protein.
  
 0.842
Pden_0836
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; KR; KEGG: sil:SPO0849 non-ribosomal peptide synthase.
  
  
 0.554
Pden_2175
PFAM: nitroreductase; KEGG: jan:Jann_3161 nitroreductase.
  
  
 0.552
Pden_2527
cob(II)yrinic acid a,c-diamide reductase; KEGG: rde:RD1_3815 cobalamin biosynthesis protein BluB; TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase.
  
  
 0.548
Pden_4195
PFAM: nitroreductase; KEGG: tko:TK0839 NAD(P)H-flavin oxidoreductase.
  
  
 0.548
Pden_2017
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO0337 cell division ATP-binding protein FtsE.
     
 0.532
Pden_2016
PFAM: protein of unknown function DUF214; KEGG: rsp:RSP_0734 cell division protein FtsX.
     
 0.525
Pden_2015
PFAM: phospholipid/glycerol acyltransferase; KEGG: rde:RD1_1601 acyltransferase, putative.
       0.510
Pden_2042
PFAM: ABC-2 type transporter; KEGG: sil:SPO0957 ABC transporter, permease protein.
  
  
 
0.458
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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