Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_2014PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: jan:Jann_0746 ABC transporter related. (309 aa)    
Predicted Functional Partners:
Pden_2013
PFAM: ABC-2 type transporter; KEGG: sit:TM1040_2524 ABC-2 type transporter.
  
 0.969
Pden_2042
PFAM: ABC-2 type transporter; KEGG: sil:SPO0957 ABC transporter, permease protein.
  
 0.863
Pden_4216
KEGG: sil:SPOA0053 nitrous oxide maturation protein NosY.
  
 
 0.689
Pden_2017
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO0337 cell division ATP-binding protein FtsE.
 
    
0.562
Pden_2015
PFAM: phospholipid/glycerol acyltransferase; KEGG: rde:RD1_1601 acyltransferase, putative.
  
 
 0.556
Pden_2016
PFAM: protein of unknown function DUF214; KEGG: rsp:RSP_0734 cell division protein FtsX.
     
 0.535
nirI
PFAM: FMN-binding domain protein; KEGG: rde:RD1_1564 nitrous oxide reductase regulatory protein NosR.
  
  
 0.518
Pden_4220
PFAM: FMN-binding domain protein; KEGG: sil:SPOA0049 nitrous-oxide reductase transcriptional activator NosR.
  
  
 0.518
atpC
ATP synthase F1 subcomplex epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.507
Pden_0836
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; KR; KEGG: sil:SPO0849 non-ribosomal peptide synthase.
  
 
 0.482
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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