Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_2016PFAM: protein of unknown function DUF214; KEGG: rsp:RSP_0734 cell division protein FtsX. (309 aa)    
Predicted Functional Partners:
Pden_2017
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO0337 cell division ATP-binding protein FtsE.
 
 
 0.999
Pden_2507
PFAM: peptidase M23B; KEGG: rsp:RSP_0933 hypothetical protein.
 
 
 
 0.972
Pden_2015
PFAM: phospholipid/glycerol acyltransferase; KEGG: rde:RD1_1601 acyltransferase, putative.
       0.855
Pden_2018
TIGRFAM: MJ0042 family finger-like protein; KEGG: rsp:RSP_0732 hypothetical protein.
 
     0.777
Pden_3611
KEGG: sit:TM1040_0586 conserved hypothetical protein.
  
     0.710
Pden_0627
KEGG: rsp:RSP_1011 hypothetical protein.
  
     0.684
Pden_1857
PFAM: glycosyl transferase, family 14; KEGG: sil:SPO3319 EpsK domain protein.
  
     0.678
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
 
 
 0.677
Pden_3954
PFAM: Rhomboid family protein; KEGG: sit:TM1040_0444 rhomboid-like protein.
 
    0.660
Pden_1948
KEGG: sit:TM1040_0184 conserved hypothetical protein.
  
     0.656
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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