Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Pden_2018TIGRFAM: MJ0042 family finger-like protein; KEGG: rsp:RSP_0732 hypothetical protein. (319 aa)    
Predicted Functional Partners:
Pden_2016
PFAM: protein of unknown function DUF214; KEGG: rsp:RSP_0734 cell division protein FtsX.
 
     0.777
Pden_0537
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rsp:RSP_1855 hypothetical protein.
  
    0.710
Pden_2015
PFAM: phospholipid/glycerol acyltransferase; KEGG: rde:RD1_1601 acyltransferase, putative.
       0.703
Pden_2017
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sil:SPO0337 cell division ATP-binding protein FtsE.
       0.703
Pden_1931
KEGG: rsp:RSP_6052 hypothetical protein.
  
     0.697
Pden_1237
KEGG: sil:SPO0951 hypothetical protein.
  
     0.686
Pden_2218
PFAM: Sporulation domain protein; KEGG: rsp:RSP_6008 hypothetical protein.
  
     0.672
Pden_1407
KEGG: rsp:RSP_2286 hypothetical protein.
  
     0.670
Pden_2135
KEGG: cel:ZK84.1 Hypothetical protein ZK84.1.
  
    0.661
Pden_0577
KEGG: rsp:RSP_2271 hypothetical protein.
  
     0.656
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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