STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2029PFAM: methyltransferase small; Methyltransferase type 11; KEGG: rsp:RSP_0748 N-6 adenine-specific DNA methylase; Belongs to the methyltransferase superfamily. (252 aa)    
Predicted Functional Partners:
Pden_2028
PFAM: protein of unknown function DUF465; KEGG: rde:RD1_3398 hypothetical protein.
       0.868
Pden_2030
KEGG: rsp:RSP_0749 hypothetical protein.
       0.868
Pden_2031
Trans-hexaprenyltranstransferase; PFAM: Polyprenyl synthetase; KEGG: sit:TM1040_3742 farnesyltranstransferase; Belongs to the FPP/GGPP synthase family.
       0.740
Pden_1269
KEGG: sil:SPO1008 hypothetical protein.
  
     0.516
Pden_3660
TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rsp:RSP_2306 putative HAD superfamily protein.
 
     0.481
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.417
Pden_2593
PFAM: protein of unknown function DUF448; KEGG: jan:Jann_0039 protein of unknown function DUF448.
  
    0.402
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.