STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2034PFAM: toluene tolerance family protein; KEGG: rsp:RSP_0890 possible protein YrbC precursor. (201 aa)    
Predicted Functional Partners:
Pden_1268
PFAM: Mammalian cell entry related domain protein; KEGG: rsp:RSP_0194 possible ABC transporter, substrate-binding protein.
 
 0.988
Pden_2035
PFAM: VacJ family lipoprotein; KEGG: sil:SPO3727 VacJ lipoprotein, putative.
 
 
 
 0.981
Pden_3691
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2458 ABC transporter, ATPase subunit.
 
 
 0.952
Pden_3690
PFAM: protein of unknown function DUF140; KEGG: rsp:RSP_2459 ABC transporter, inner membrane subunit.
 
 
 0.941
Pden_2315
PFAM: Mammalian cell entry related domain protein; KEGG: rsp:RSP_2811 putative ABC transporter, periplasmic substrate-binding protein.
  
 0.911
Pden_2316
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rsp:RSP_2810 ABC transporter, ATPase subunit.
  
 
 0.860
Pden_2317
PFAM: protein of unknown function DUF140; KEGG: rsp:RSP_2809 ABC transporter, inner membrane subunit.
  
 
 0.857
Pden_2036
Type I secretion system ATPase; KEGG: rsp:RSP_0892 ABC protein toxin exporter, fused ATPase and inner membrane domain; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.605
Pden_2037
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: rsp:RSP_0893 RTX secretion protein D, HlyD family.
  
    0.573
Pden_2686
KEGG: sil:SPO3441 hypothetical protein.
  
     0.511
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.