Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Pden_2113PFAM: export protein FliQ, family 3; KEGG: rsp:RSP_1328 flagellar biosynthetic protein FliQ. (88 aa)    
Predicted Functional Partners:
Pden_2110
KEGG: rsp:RSP_1331 flagellar basal-body rod protein FlgB.
 
 
 0.999
Pden_2111
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rsp:RSP_1330 putative flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
 
 0.999
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
 
 0.999
Pden_2649
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
 
 0.999
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
 
 
 0.999
Pden_2696
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rsp:RSP_1303 putative flagellar hook protein.
 
 
 0.999
Pden_2115
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: rde:RD1_0258 flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
 
 
 0.998
Pden_2626
PFAM: type III secretion exporter; KEGG: sil:SPO0172 flagellar biosynthetic protein FlhB.
 
 
 0.998
fliE
PFAM: flagellar hook-basal body complex protein FliE; KEGG: rsp:RSP_1329 putative flagellar hook-basal body complex protein.
 
 
 0.997
Pden_2627
KEGG: sil:SPO0171 flagellar biosynthetic protein FliR.
 
 
 0.997
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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