Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_2161Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: atc:AGR_L_1086 hypothetical protein. (294 aa)    
Predicted Functional Partners:
Pden_2160
Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: atc:AGR_L_1084 putative periplasmic ribose-binding protein of ABC transport system; TC 3.A.1.2.-.
 
   
 0.740
Pden_2163
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: atc:AGR_L_1091 xylitol dehydrogenase.
 
   
 0.648
Pden_2157
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: atc:AGR_L_1076 ribitol 2-dehydrogenase.
 
     0.616
Pden_0506
PFAM: ROK family protein; regulatory protein, MarR; KEGG: rsp:RSP_0991 putative transcriptional regulator, ROK family.
 
  
 0.591
Pden_0836
PFAM: beta-ketoacyl synthase; Thioesterase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; phosphopantetheine-binding; KR; KEGG: sil:SPO0849 non-ribosomal peptide synthase.
  
  
 0.556
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mlo:mlr5033 xylulokinase.
 
   
 0.551
Pden_2155
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: atc:AGR_L_1073 short chain dehydrogenase.
 
   
 0.549
Pden_3015
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Non-ribosomal peptide synthetase; KEGG: pen:PSEEN2503 non-ribosomal peptide synthetase BasA/D.
 
  
 0.506
Pden_2159
Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atu:Atu4321 ABC transporter, nucleotide binding/ATPase protein [ribose]; TC 3.A.1.2.-.
 
     0.496
Pden_0477
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; KEGG: bur:Bcep18194_B1227 transcriptional regulator, XRE family with cupin sensor domain.
  
 
 0.489
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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