Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_2172PFAM: peptidase M48, Ste24p; KEGG: rde:RD1_1656 peptidase, M48 family, putative. (267 aa)    
Predicted Functional Partners:
Pden_2507
PFAM: peptidase M23B; KEGG: rsp:RSP_0933 hypothetical protein.
 
 
 
 0.752
Pden_2173
KEGG: rsp:RSP_6045 hypothetical protein.
 
     0.747
Pden_3473
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mlo:mll3276 adenylate cyclase cya3 [Sinorhizobium meliloti].
  
 
 0.732
Pden_0627
KEGG: rsp:RSP_1011 hypothetical protein.
  
     0.560
Pden_3411
Hypothetical protein; KEGG: ccr:CC1457 flagellin modification protein FlmG.
   
 
 0.558
Pden_2171
KEGG: rde:RD1_2814 hypothetical protein.
 
     0.554
Pden_2508
KEGG: sil:SPO3812 carboxyl-terminal protease family protein; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family.
  
 
 0.554
Pden_3624
KEGG: rde:RD1_2154 hypothetical protein.
  
     0.550
Pden_0577
KEGG: rsp:RSP_2271 hypothetical protein.
  
     0.526
Pden_2292
KEGG: sit:TM1040_0020 conserved hypothetical protein.
  
     0.485
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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