Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Pden_2175PFAM: nitroreductase; KEGG: jan:Jann_3161 nitroreductase. (188 aa)    
Predicted Functional Partners:
Pden_2176
KEGG: rsp:RSP_0810 hypothetical protein.
  
    0.882
Pden_2174
PFAM: protein of unknown function DUF167; KEGG: sil:SPO0937 hypothetical protein; Belongs to the UPF0235 family.
       0.663
Pden_3472
Hypothetical protein; TIGRFAM: uncharacterized domain; PFAM: protein of unknown function DUF181; KEGG: ret:RHE_PE00437 hypothetical protein.
  
  
 0.622
Pden_3136
PFAM: regulatory protein, ArsR; KEGG: nwi:Nwi_3123 transcriptional regulatory protein, ArsR family.
     
 0.612
Pden_3342
PFAM: regulatory protein, ArsR; KEGG: nwi:Nwi_3123 transcriptional regulatory protein, ArsR family.
     
 0.612
Pden_4196
Hypothetical protein; TIGRFAM: uncharacterized domain; PFAM: protein of unknown function DUF181; KEGG: bcn:Bcen_5136 protein of unknown function DUF181.
  
  
 0.577
Pden_0030
PFAM: ABC-2 type transporter; KEGG: rsp:RSP_2587 ABC multidrug efflux transporter, inner membrane subunit.
  
  
 0.552
Pden_2013
PFAM: ABC-2 type transporter; KEGG: sit:TM1040_2524 ABC-2 type transporter.
  
  
 0.552
Pden_2042
PFAM: ABC-2 type transporter; KEGG: sil:SPO0957 ABC transporter, permease protein.
  
  
 0.552
Pden_1649
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.
 
     0.520
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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