Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_2189KEGG: rsp:RSP_1977 cobalt chelatase, CobS small subunit; TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5. (324 aa)    
Predicted Functional Partners:
Pden_2191
KEGG: rde:RD1_3340 aerobic cobaltochelatase CobT subunit; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit; SMART: von Willebrand factor, type A.
 
 
 0.995
Pden_2532
Cobaltochelatase CobN subunit; PFAM: CobN/magnesium chelatase; KEGG: bja:blr3263 cobalamin biosynthesis protein.
     
 0.917
cobB
Hydrogenobyrinate a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
     
 0.901
Pden_2529
cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
     
  0.900
Pden_2549
TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: jan:Jann_0549 cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
     
  0.900
Pden_2190
Hypothetical protein.
       0.780
Pden_2481
PFAM: von Willebrand factor, type A; KEGG: sil:SPOA0214 nitric oxide reductase D protein.
  
  
 0.723
Pden_1874
PFAM: heat shock protein DnaJ domain protein; KEGG: rsp:RSP_1978 molecular chaperone, DnaJ family.
 
   
 0.708
Pden_2484
KEGG: sil:SPOA0217 nitric oxide reductase, small subunit.
  
    0.669
Pden_2483
PFAM: cytochrome c oxidase, subunit I; KEGG: sil:SPOA0216 nitric oxide reductase, large subunit.
  
  
 0.639
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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