Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_2255KEGG: rsp:RSP_6106 hypothetical protein. (167 aa)    
Predicted Functional Partners:
moaA
GTP cyclohydrolase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.703
Pden_4135
KEGG: rsp:RSP_1186 hypothetical protein.
  
     0.587
Pden_0315
PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; homoserine dehydrogenase, NAD-binding; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KEGG: sil:SPO0852 oxidoreductase, Gfo/Idh/MocA family.
  
     0.569
Pden_2292
KEGG: sit:TM1040_0020 conserved hypothetical protein.
  
     0.558
Pden_2242
KEGG: sil:SPO2775 hypothetical protein.
  
     0.541
Pden_4116
KEGG: rru:Rru_A2561 hypothetical protein.
  
     0.537
Pden_2294
KEGG: jan:Jann_0220 hypothetical protein.
  
     0.519
Pden_1748
PFAM: MltA-interacting MipA family protein; KEGG: rpc:RPC_0793 MltA-interacting MipA.
  
     0.508
Pden_2240
KEGG: jan:Jann_1184 lipoprotein, putative.
  
     0.485
Pden_0740
KEGG: jan:Jann_3368 hypothetical protein.
  
     0.481
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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