STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2363PFAM: beta-lactamase domain protein; KEGG: rsp:RSP_2589 hypothetical protein. (351 aa)    
Predicted Functional Partners:
Pden_2358
KEGG: rsp:RSP_2590 hypothetical protein.
 
     0.867
Pden_0023
Rhodanese; KEGG: rsp:RSP_2581 rhodanese.
 
 
 0.806
Pden_0020
PFAM: Pyrrolo-quinoline quinone; KEGG: rsp:RSP_2578 putative pqq dehydrogenase protein.
 
   
 0.758
Pden_0022
Amino acid ABC transporter substrate-binding protein, PAAT family; SMART: extracellular solute-binding protein, family 3; KEGG: rsp:RSP_2580 putative methanol oxidation protein; TC 3.A.1.3.-.
 
     0.752
Pden_2350
KEGG: rde:RD1_0883 hypothetical protein.
 
     0.751
pqqB
Coenzyme PQQ biosynthesis protein B; May be involved in the transport of PQQ or its precursor to the periplasm; Belongs to the PqqB family.
 
   
 0.741
Pden_0024
KEGG: rde:RD1_0896 hypothetical protein.
  
     0.733
Pden_0021
Hypothetical protein; KEGG: sme:SMb20174 putative cytochrome c protein.
 
     0.731
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
     0.723
Pden_2993
PFAM: Pyrrolo-quinoline quinone; KEGG: rpe:RPE_3139 pyrrolo-quinoline quinone.
 
   
 0.703
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.