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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2425KEGG: sil:SPO2330 hypothetical protein. (246 aa)    
Predicted Functional Partners:
Pden_2426
PFAM: Pyrrolo-quinoline quinone; KEGG: rsp:RSP_2698 putative quinoprotein.
 
     0.809
Pden_2424
TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6, transmembrane; KEGG: sil:SPO2338 RarD.
       0.779
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.739
Pden_2766
KEGG: rsp:RSP_0839 predicted secreted periplasmic protein.
  
     0.655
Pden_1280
KEGG: rsp:RSP_2816 hypothetical protein.
  
     0.632
Pden_1237
KEGG: sil:SPO0951 hypothetical protein.
  
     0.627
Pden_1895
PFAM: protein of unknown function DUF177; KEGG: rsp:RSP_2615 hypothetical protein.
  
    0.600
Pden_1874
PFAM: heat shock protein DnaJ domain protein; KEGG: rsp:RSP_1978 molecular chaperone, DnaJ family.
  
   
 0.599
Pden_2217
KEGG: rsp:RSP_6009 hypothetical protein.
  
     0.583
Pden_3675
KEGG: sit:TM1040_0507 conserved hypothetical protein.
  
    0.576
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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