STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2530PFAM: protein of unknown function DUF1636; KEGG: rsp:RSP_2829 hypothetical protein. (117 aa)    
Predicted Functional Partners:
Pden_2533
TIGRFAM: precorrin-3B synthase; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; KEGG: sit:TM1040_2211 precorrin-3B synthase.
 
     0.952
Pden_2532
Cobaltochelatase CobN subunit; PFAM: CobN/magnesium chelatase; KEGG: bja:blr3263 cobalamin biosynthesis protein.
 
     0.947
Pden_2531
TIGRFAM: cobalamin biosynthesis protein CobW; PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: sit:TM1040_2209 cobalamin (vitamin B12) biosynthesis CobW.
 
    0.908
Pden_2535
TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rsp:RSP_2826 putative precorrin-2 C20-methyltransferase; Belongs to the precorrin methyltransferase family.
 
     0.898
Pden_2536
TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rsp:RSP_2824 putative precorrin-3B C17-methyltransferase.
 
     0.839
Pden_2534
PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: rsp:RSP_6217 precorrin-8X methylmutase.
 
     0.833
Pden_2539
KEGG: bja:blr3270 precorrin methylase.
 
     0.763
Pden_2542
precorrin-6A synthase (deacetylating); Catalyzes the methylation of C-1 in precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A.
 
     0.748
Pden_2538
KEGG: rsp:RSP_2823 putative precorrin-6y C5,15-methyltransferase; TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
 
     0.651
Pden_2537
PFAM: Precorrin-6x reductase CbiJ/CobK; KEGG: rsp:RSP_2825 precorrin-6x reductase.
 
     0.491
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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