STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2585KEGG: rsp:RSP_1195 competence protein F. (245 aa)    
Predicted Functional Partners:
Pden_2646
KEGG: rsp:RSP_1315 hypothetical protein.
   
    0.904
Pden_4323
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: jan:Jann_3158 DNA processing protein DprA, putative.
 
 
 0.873
Pden_2304
PFAM: DNA repair protein RadC; KEGG: rsp:RSP_1171 DNA repair protein; Belongs to the UPF0758 family.
 
    0.869
Pden_1542
PFAM: DNA repair protein RadC; KEGG: rsp:RSP_1171 DNA repair protein; Belongs to the UPF0758 family.
 
    0.858
Pden_3961
Mg chelatase, subunit ChlI; KEGG: sil:SPO0402 competence protein ComM; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase.
 
  
 0.853
Pden_2588
PFAM: regulatory protein, MarR; KEGG: rsp:RSP_1191 transcriptional regulator, MarR family.
  
    0.820
Pden_3718
PFAM: ComEC/Rec2-related protein; KEGG: sil:SPO2155 competence protein.
 
  
 0.818
Pden_2587
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: sil:SPO0069 hydrolase, carbon-nitrogen family.
  
  
 0.815
Pden_3129
PFAM: SMF family protein; KEGG: nar:Saro_2201 smf protein.
 
 
 0.808
Pden_2586
Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.804
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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