STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2637KEGG: rsp:RSP_0208 hypothetical protein. (353 aa)    
Predicted Functional Partners:
Pden_2635
KEGG: rsp:RSP_0211 hypothetical protein.
  
 
 0.859
Pden_2634
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rsp:RSP_0212 HNH nuclease.
  
  
 0.838
Pden_2636
TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: rsp:RSP_0209 possible prophage Lp3 protein 18.
     
 0.832
Pden_2633
PFAM: phage Terminase; KEGG: rsp:RSP_0213 phage terminase-like protein large subunit.
     
 0.797
Pden_2638
KEGG: rsp:RSP_0207 hypothetical protein.
       0.782
Pden_2639
KEGG: rsp:RSP_0206 hypothetical protein.
       0.779
Pden_2640
Hypothetical protein.
       0.773
Pden_2641
Hypothetical protein.
       0.768
Pden_2642
Hypothetical protein.
       0.756
Pden_2643
Hypothetical protein.
       0.401
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.