STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_2686KEGG: sil:SPO3441 hypothetical protein. (516 aa)    
Predicted Functional Partners:
Pden_3954
PFAM: Rhomboid family protein; KEGG: sit:TM1040_0444 rhomboid-like protein.
 
    0.773
Pden_1237
KEGG: sil:SPO0951 hypothetical protein.
  
     0.756
Pden_2685
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rsp:RSP_0913 enoyl-CoA hydratase/isomerase.
       0.738
Pden_3279
Hypothetical protein; KEGG: sil:SPO3430 outer membrane porin.
  
     0.733
Pden_2687
Microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62; PFAM: peptidase U62, modulator of DNA gyrase; KEGG: jan:Jann_0403 peptidase U62, modulator of DNA gyrase.
       0.727
Pden_2688
PFAM: inositol monophosphatase; KEGG: rsp:RSP_0917 inositol monophosphatase.
       0.727
Pden_1931
KEGG: rsp:RSP_6052 hypothetical protein.
  
     0.716
Pden_0537
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rsp:RSP_1855 hypothetical protein.
 
     0.713
Pden_2240
KEGG: jan:Jann_1184 lipoprotein, putative.
  
     0.712
Pden_2171
KEGG: rde:RD1_2814 hypothetical protein.
  
     0.708
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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