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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3000PFAM: von Willebrand factor, type A; KEGG: rpe:RPE_3132 von Willebrand factor, type A. (335 aa)    
Predicted Functional Partners:
Pden_2999
KEGG: rpc:RPC_1913 MxaA protein, putative.
 
  
 0.995
Pden_3001
KEGG: rpe:RPE_3131 hypothetical protein.
 
  
  0.994
Pden_2996
Methanol dehydrogenase, beta subunit; Catalyzes the oxidation of primary alcohols including methanol.
 
  
  0.990
Pden_3002
KEGG: rpe:RPE_3130 von Willebrand factor, type A.
 
  
 0.989
Pden_2995
Cytochrome c, class I; Electron acceptor for MDH. Acts in methanol oxidation.
 
  
  0.988
Pden_2994
Amino acid ABC transporter substrate-binding protein, PAAT family; SMART: extracellular solute-binding protein, family 3; KEGG: rpc:RPC_1908 extracellular solute-binding protein, family 3; TC 3.A.1.3.-.
 
  
  0.987
Pden_3003
KEGG: rpe:RPE_3129 MxaD protein, putative.
 
  
  0.987
Pden_2993
PFAM: Pyrrolo-quinoline quinone; KEGG: rpe:RPE_3139 pyrrolo-quinoline quinone.
 
  
  0.983
Pden_2998
KEGG: rpc:RPC_1912 hypothetical protein.
 
  
 0.958
Pden_0020
PFAM: Pyrrolo-quinoline quinone; KEGG: rsp:RSP_2578 putative pqq dehydrogenase protein.
 
  
  0.954
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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