STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3033PFAM: periplasmic binding protein; KEGG: eca:ECA3564 iron-chelating periplasmic-binding protein. (345 aa)    
Predicted Functional Partners:
Pden_3031
PFAM: transport system permease protein; KEGG: nha:Nham_0954 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.959
Pden_3032
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nwi:Nwi_2074 ABC transporter, ATPase subunit.
 
 
 0.958
Pden_3030
PFAM: Methyltransferase type 12; KEGG: dps:DP0853 hypothetical protein.
 
 
   0.912
Pden_0865
PFAM: transport system permease protein; ABC-3 protein; KEGG: rpd:RPD_2479 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.843
Pden_0864
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpd:RPD_2478 ABC transporter related.
 
 
 0.838
Pden_3029
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: ecp:ECP_2036 hypothetical TonB dependent receptor.
 
   
 0.837
Pden_1169
PFAM: transport system permease protein; KEGG: eca:ECA3095 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.833
Pden_1170
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA2310 putative iron ABC transporter ATP-binding protein.
 
 
 0.827
Pden_2568
PFAM: transport system permease protein; KEGG: pfl:PFL_3501 heme/hemin ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.757
Pden_3034
Hypothetical protein.
       0.737
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.