Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Pden_3203PFAM: conjugation TrbI family protein; KEGG: mes:Meso_0500 conjugation TrbI-like protein. (388 aa)    
Predicted Functional Partners:
Pden_3202
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mes:Meso_0501 conjugal transfer protein TrbG/VirB9/CagX.
 
 
 0.988
Pden_3197
SMART: AAA ATPase; KEGG: mes:Meso_2321 ATPas.
 
 
 0.980
Pden_0148
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mes:Meso_0501 conjugal transfer protein TrbG/VirB9/CagX.
 
 
 0.950
Pden_1476
PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mes:Meso_0501 conjugal transfer protein TrbG/VirB9/CagX.
 
 
 0.950
Pden_3198
KEGG: mes:Meso_3855 conjugal transfer protein TrbJ.
 
 
 
 0.950
Pden_3200
PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mes:Meso_0503 TrbL/VirB6 plasmid conjugal transfer protein.
 
   
 0.950
Pden_3201
PFAM: Conjugal transfer protein; KEGG: mes:Meso_0502 conjugal transfer protein.
 
   
 0.949
Pden_0153
SMART: AAA ATPase; KEGG: mes:Meso_2321 ATPas.
 
 
 0.934
Pden_1481
SMART: AAA ATPase; KEGG: mes:Meso_2321 ATPas.
 
 
 0.934
Pden_3204
KEGG: rpc:RPC_3531 hypothetical protein.
 
   
 0.926
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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