STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3206Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: bxe:Bxe_C0266 transcriptional regulator, GntR family. (236 aa)    
Predicted Functional Partners:
Pden_3205
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: mes:Meso_3862 transcriptional regulator, LysR family.
  
    0.681
Pden_0188
PFAM: regulatory proteins, IclR; KEGG: bps:BPSS2127 IclR transcriptional regulator protein.
 
  
 0.542
Pden_3209
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll6794 hypothetical protein.
 
     0.534
Pden_3207
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpd:RPD_0611 TRAP dicarboxylate transporter-DctM subunit.
 
     0.504
Pden_0240
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mes:Meso_4461 transcriptional regulator, GntR family.
  
  
 0.494
Pden_3208
Hypothetical protein; KEGG: rpd:RPD_0610 tripartite ATP-independent periplasmic transporter, DctQ component.
 
     0.492
Pden_3479
PFAM: regulatory proteins, IclR; KEGG: rpc:RPC_0118 transcriptional regulator, IclR family.
 
  
 0.471
Pden_3050
PFAM: regulatory proteins, IclR; KEGG: rha:RHA1_ro08622 probable transcriptional regulator, IclR family.
 
  
 0.468
Pden_4400
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: rru:Rru_A1414 regulatory protein GntR.
  
     0.464
Pden_3536
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pau:PA14_64820 putative transcriptional regulator.
  
  
 0.455
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.