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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3208Hypothetical protein; KEGG: rpd:RPD_0610 tripartite ATP-independent periplasmic transporter, DctQ component. (183 aa)    
Predicted Functional Partners:
Pden_3209
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll6794 hypothetical protein.
 
  
 0.935
Pden_3207
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: rpd:RPD_0611 TRAP dicarboxylate transporter-DctM subunit.
 
 
 0.865
Pden_3258
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rpd:RPD_0609 TRAP dicarboxylate transporter-DctP subunit.
 
  
 0.795
Pden_3219
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bja:bll6794 hypothetical protein.
 
  
 0.779
Pden_4116
KEGG: rru:Rru_A2561 hypothetical protein.
  
     0.635
Pden_3540
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_0636 TRAP-T family transporter, DctP (periplasmic binding) subunit.
 
  
 0.610
Pden_3206
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; KEGG: bxe:Bxe_C0266 transcriptional regulator, GntR family.
 
     0.492
Pden_2360
PFAM: coenzyme PQQ synthesis D; KEGG: rde:RD1_1151 coenzyme PQQ synthesis protein D.
  
     0.454
Pden_3266
PFAM: Uncharacterized protein UPF0065; KEGG: dsy:DSY0976 hypothetical protein.
  
     0.439
Pden_3499
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: eba:ebA5367 conserved hypothetical protein, predicted TRAP C4-dicarboxylate transport system permease DctM subunit,DedA falily.
 
 
 0.421
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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