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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3333PFAM: transposase, IS4 family protein; KEGG: sil:SPOA0134 ISSpo7, transposase. (186 aa)    
Predicted Functional Partners:
Pden_1007
Transposase, IS5 family; KEGG: nar:Saro_2759 transposase orfA IS5 family element.
     0.792
Pden_2059
Transposase, IS5 family; KEGG: nar:Saro_2759 transposase orfA IS5 family element.
     0.792
Pden_0077
Transposase; KEGG: gox:GOX2729 transposase.
 
     0.706
Pden_1222
Transposase-like protein; KEGG: mag:amb0408 transposase and inactivated derivative.
     0.695
Pden_2704
Transposase-like protein; KEGG: mag:amb0408 transposase and inactivated derivative.
     0.695
Pden_1015
KEGG: ccr:CC2592 ISCc1, transposase OrfB.
 
     0.690
Pden_3334
Hypothetical protein.
       0.409
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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