STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3347PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr1197 hypothetical protein. (136 aa)    
Predicted Functional Partners:
Pden_3348
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gvi:glr1626 hypothetical protein.
 
    0.857
Pden_3346
Hypothetical protein.
       0.705
Pden_3350
PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: sme:SMa0896 hypothetical protein.
 
     0.563
Pden_3349
PFAM: histone family protein nucleoid-structuring protein H-NS; KEGG: jan:Jann_4229 histone-like nucleoid-structuring protein H-NS.
       0.531
Pden_2817
PFAM: glutathione-dependent formaldehyde-activating, GFA; KEGG: pae:PA2722 hypothetical protein.
 
    0.483
Pden_3048
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: ret:RHE_CH02034 probable monooxygenase protein.
  
     0.471
Pden_3150
PFAM: protein of unknown function DUF899, thioredoxin family protein; KEGG: pfo:Pfl_1441 protein of unknown function DUF899, thioredoxin-like.
 
     0.461
Pden_3345
PFAM: protein of unknown function DUF1127; KEGG: rde:RD1_2086 hypothetical protein.
       0.450
Pden_4363
PFAM: bifunctional deaminase-reductase domain protein; KEGG: sme:SMc04173 hypothetical protein.
 
    0.450
Pden_1491
PFAM: regulatory protein, TetR; KEGG: nfa:nfa16940 putative transcriptional regulator.
 
    0.448
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.