STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3465PFAM: Rieske [2Fe-2S] domain protein; KEGG: bxe:Bxe_A3468 putative iron-sulphur rieske protein. (384 aa)    
Predicted Functional Partners:
Pden_1178
2-chlorobenzoate 1,2-dioxygenase; PFAM: aromatic-ring-hydroxylating dioxygenase, beta subunit; KEGG: bur:Bcep18194_C7047 2-chlorobenzoate 1,2-dioxygenase.
 
 
 0.892
Pden_1104
PFAM: 4-vinyl reductase, 4VR; KEGG: reu:Reut_B4820 4-vinyl reductase, 4VR.
 
    0.707
Pden_3466
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: csa:Csal_2385 transcriptional regulator, LysR family.
 
     0.690
Pden_3464
PFAM: ferredoxin; KEGG: sil:SPO0766 iron-sulfur cluster-binding protein.
 
  
 0.678
Pden_1188
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sme:SMa0752 possible dioxygenase reductase subunit.
  
 0.644
Pden_2831
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: rsp:RSP_3979 ferredoxin.
  
 0.634
Pden_3455
PFAM: protein of unknown function DUF1028; KEGG: rde:RD1_4139 hypothetical protein.
 
     0.602
Pden_3456
PFAM: Endoribonuclease L-PSP; KEGG: rde:RD1_4138 endoribonuclease L-PSP family protein, putative.
  
    0.563
Pden_3457
PFAM: FAD dependent oxidoreductase; KEGG: pau:PA14_71210 putative monooxygenase.
 
  
 0.561
Pden_3454
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rde:RD1_4140 transcriptional regulator, LysR family, putative.
  
     0.526
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.