STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3527PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpb:RPB_2695 TonB-dependent receptor. (694 aa)    
Predicted Functional Partners:
Pden_3528
PFAM: regulatory proteins, IclR; KEGG: pfl:PFL_3621 transcriptional regulator, IclR family.
 
     0.787
Pden_3010
PFAM: periplasmic binding protein; KEGG: ecs:ECs3913 putative ferrichrome-binding protein.
 
  
 0.696
Pden_3526
KEGG: pae:PA4155 hypothetical protein.
 
     0.666
Pden_0725
TIGRFAM: TonB family protein; KEGG: rpb:RPB_1657 TonB-like protein.
 
 
 0.659
Pden_1630
PFAM: FecR protein; KEGG: nwi:Nwi_2882 FecR protein.
 
  
 0.603
Pden_2978
PFAM: FecR protein; KEGG: nwi:Nwi_2050 probable FecR, iron siderophore sensor protein.
 
  
 0.591
Pden_0685
Cell division and transport-associated protein TolA; PFAM: TolA family protein; KEGG: rsp:RSP_0670 possible TolA protein; TC 2.C.1.2.1.
  
 
 0.555
Pden_1139
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rsp:RSP_1440 TonB dependent, hydroxamate-type ferrisiderophore, outer membrane receptor.
  
  
 0.550
Pden_3016
PFAM: phosphopantetheine-binding; KEGG: pen:PSEEN2505 2,3-dihydroxybenzoate-AMP ligase.
 
  
 0.545
Pden_1171
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nha:Nham_3366 TonB-dependent receptor.
 
  
 0.539
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.