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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3595PFAM: IS66 Orf2 family protein; KEGG: pol:Bpro_5536 IS66 Orf2 like. (115 aa)    
Predicted Functional Partners:
Pden_3593
PFAM: transposase IS66; KEGG: mag:amb3320 transposase and inactivated derivative.
 
     0.859
Pden_0068
PFAM: transposase IS66; KEGG: sme:SMa2171 hypothetical protein.
 
     0.778
Pden_3306
KEGG: bja:blr1867 hypothetical protein.
 
     0.776
Pden_3307
PFAM: transposase IS66; KEGG: bja:blr1700 putative transposase.
 
     0.775
Pden_3310
KEGG: sme:SMb21085 hypothetical protein encoded by ORF3 of ISRm14, IS66 family.
 
     0.773
Pden_3041
KEGG: bja:blr1867 hypothetical protein.
 
     0.688
Pden_3596
TIGRFAM: phage tape measure protein; KEGG: nwi:Nwi_1471 hypothetical protein.
       0.410
Pden_3597
Hypothetical protein.
       0.410
Pden_3598
Hypothetical protein.
       0.410
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.