STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3842Hypothetical protein. (278 aa)    
Predicted Functional Partners:
Pden_3840
Hypothetical protein.
       0.793
Pden_3841
PFAM: helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ppe:PEPE_0535 superfamily II DNA/RNA helicase, SNF2 family.
       0.793
Pden_3839
Hypothetical protein.
       0.756
Pden_3838
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: sal:Sala_2300 DNA methylase N-4/N-6; Belongs to the N(4)/N(6)-methyltransferase family.
       0.738
Pden_3843
Hypothetical protein.
       0.574
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.