STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3935KEGG: rde:RD1_2636 hypothetical protein. (252 aa)    
Predicted Functional Partners:
Pden_2778
Putative PAS/PAC sensor protein; SMART: PAS domain containing protein; KEGG: rsp:RSP_1521 hypothetical protein.
  
    0.834
Pden_0496
PFAM: Hpt domain protein; KEGG: sit:TM1040_2886 Hpt protein.
  
    0.750
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
       0.712
Pden_3937
KEGG: jan:Jann_2439 transferase hexapeptide protein.
       0.712
Pden_2166
PFAM: glycosyl transferase, family 2; General secretory system II, protein E domain protein; KEGG: rsp:RSP_1872 glycosyl transferase, family 2.
  
    0.699
Pden_2706
KEGG: rde:RD1_0313 hypothetical protein.
  
     0.689
Pden_1995
PFAM: HemY domain protein; KEGG: rsp:RSP_1508 uncharacterized HemY-like membrane protein.
  
     0.604
Pden_3938
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: sil:SPO1947 phosphate regulon sensor histidine kinase, putative.
       0.601
Pden_0584
KEGG: sil:SPO1180 hypothetical protein.
  
     0.600
Pden_2846
KEGG: jan:Jann_1905 hypothetical protein.
  
    0.595
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.