STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_3954PFAM: Rhomboid family protein; KEGG: sit:TM1040_0444 rhomboid-like protein. (237 aa)    
Predicted Functional Partners:
Pden_2217
KEGG: rsp:RSP_6009 hypothetical protein.
  
     0.774
Pden_2686
KEGG: sil:SPO3441 hypothetical protein.
 
    0.773
Pden_0431
KEGG: rsp:RSP_6127 hypothetical protein.
  
     0.767
Pden_1280
KEGG: rsp:RSP_2816 hypothetical protein.
 
     0.767
Pden_0627
KEGG: rsp:RSP_1011 hypothetical protein.
  
     0.766
Pden_0427
KEGG: sil:SPO0311 hypothetical protein.
  
     0.754
cpoB
Conserved hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
     0.751
Pden_0577
KEGG: rsp:RSP_2271 hypothetical protein.
  
     0.743
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.739
Pden_1237
KEGG: sil:SPO0951 hypothetical protein.
  
     0.738
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.