Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pden_4044PFAM: NnrS family protein; KEGG: sme:SMa1194 hypothetical protein. (504 aa)    
Predicted Functional Partners:
Pden_1689
PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; FAD-binding 9, siderophore-interacting domain protein; KEGG: gbe:GbCGDNIH1_1674 dihydropteridine reductase; Belongs to the globin family.
  
  
 0.669
Pden_2483
PFAM: cytochrome c oxidase, subunit I; KEGG: sil:SPOA0216 nitric oxide reductase, large subunit.
 
  
 0.642
pazS
TIGRFAM: pseudoazurin; PFAM: blue (type 1) copper domain protein; KEGG: sme:SMa1243 Azu1 pseudoazurin (blue copper protein).
 
  
 0.599
Pden_4043
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rsp:RSP_1201 hypothetical protein.
       0.584
Pden_2481
PFAM: von Willebrand factor, type A; KEGG: sil:SPOA0214 nitric oxide reductase D protein.
 
  
 0.561
Pden_4238
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; KEGG: rde:RD1_2438 cyclic nucleotide-binding protein, putative.
 
   
 0.537
Pden_2484
KEGG: sil:SPOA0217 nitric oxide reductase, small subunit.
 
    0.522
Pden_4237
TIGRFAM: nitrite transporter; PFAM: major facilitator superfamily MFS_1; KEGG: bms:BRA0300 nitrite extrusion protein.
 
   
 0.522
Pden_4453
PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMb20436 putative nitrate transporter protein.
 
   
 0.513
Pden_2496
KEGG: rde:RD1_1575 hypothetical protein.
 
  
 0.498
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.