Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_4099Cysteine desulfuration protein SufE; PFAM: Fe-S metabolism associated SufE; KEGG: jan:Jann_1840 Fe-S metabolism associated SufE. (135 aa)    
Predicted Functional Partners:
Pden_3970
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.986
Pden_3964
Iron-regulated ABC transporter membrane component SufB; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: sit:TM1040_1242 FeS assembly protein SufB.
 
 
 0.905
Pden_3966
KEGG: sil:SPO2018 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.899
Pden_3967
PFAM: SufBD protein; KEGG: rde:RD1_2692 FeS assembly protein SufD, putative.
 
 
 0.896
Pden_0409
PFAM: aminotransferase, class V; KEGG: ret:RHE_PE00221 hypothetical protein.
 
 
 0.705
Pden_4100
KEGG: rsp:RSP_1972 hypothetical protein.
       0.702
Pden_1071
PFAM: aminotransferase, class V; KEGG: bja:blr3095 probable aminotransferase.
  
 
 0.658
Pden_1749
PFAM: protein of unknown function DUF59; KEGG: rde:RD1_2957 hypothetical protein.
 
   
 0.584
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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