Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_4100KEGG: rsp:RSP_1972 hypothetical protein. (169 aa)    
Predicted Functional Partners:
Pden_1789
PFAM: surface presentation of antigens (SPOA) protein; KEGG: rsp:RSP_6099 possible flagellar switch protein FliM.
  
     0.748
Pden_1931
KEGG: rsp:RSP_6052 hypothetical protein.
  
     0.738
Pden_1882
KEGG: rde:RD1_2981 hypothetical protein.
  
     0.728
Pden_0591
KEGG: rsp:RSP_2869 possible tellurite resistance protein.
  
     0.725
Pden_0537
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rsp:RSP_1855 hypothetical protein.
  
     0.709
Pden_0685
Cell division and transport-associated protein TolA; PFAM: TolA family protein; KEGG: rsp:RSP_0670 possible TolA protein; TC 2.C.1.2.1.
  
     0.709
Pden_4099
Cysteine desulfuration protein SufE; PFAM: Fe-S metabolism associated SufE; KEGG: jan:Jann_1840 Fe-S metabolism associated SufE.
       0.702
Pden_2218
PFAM: Sporulation domain protein; KEGG: rsp:RSP_6008 hypothetical protein.
  
     0.676
Pden_3969
KEGG: rsp:RSP_0432 hypothetical protein.
  
     0.676
Pden_2240
KEGG: jan:Jann_1184 lipoprotein, putative.
  
     0.670
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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