Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_4149KEGG: sil:SPO0992 thioredoxin SoxW. (186 aa)    
Predicted Functional Partners:
Pden_4150
PFAM: cytochrome c, class I; KEGG: sil:SPO0993 monoheme cytochrome c SoxX.
 
     0.925
Pden_4151
KEGG: sil:SPO0994 sulfur oxidation protein SoxY.
 
   
 0.919
Pden_4147
SoxS; KEGG: rde:RD1_1508 SoxS.
 
     0.910
Pden_4152
Sulfur compound chelating protein SoxZ; KEGG: rde:RD1_1513 sulfur oxidation Z protein.
 
     0.895
Pden_4153
Diheme cytochrome SoxA (sulfur oxidation); C-type diheme cytochrome, which is part of the SoxAX cytochrome complex involved in sulfur oxidation. The SoxAX complex catalyzes the formation of a heterodisulfide bond between the conserved cysteine residue on a sulfur carrier SoxYZ complex subunit SoxY and thiosulfate or other inorganic sulfur substrates. This leads to the liberation of two electrons, which may be transferred from the SoxAX complex to another cytochrome c that then channels them into the respiratory electron transport chain. Some electrons may be used for reductive CO(2) fi [...]
 
     0.883
Pden_4148
PFAM: cytochrome c biogenesis protein, transmembrane region; KEGG: sil:SPO0991 sulfur oxidation V protein.
 
   
 0.866
Pden_4145
PFAM: protein of unknown function DUF395, YeeE/YedE; KEGG: sil:SPO0988 YeeE/YedE family protein.
 
     0.847
Pden_4155
Sulfur dehydrogenase subunit SoxC; PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: rde:RD1_1516 sulfite dehydrogenase SoxC protein.
 
     0.837
Pden_4154
Sulfate thiol esterase SoxB; PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: sil:SPO0997 sulfur oxidation B protein; Belongs to the 5'-nucleotidase family.
 
     0.832
Pden_4156
Sulfur dehydrogenase subunit SoxD; PFAM: cytochrome c, class I; KEGG: sil:SPO0999 diheme cytochrome c SoxD.
 
     0.831
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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