STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_4194Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; Tetratricopeptide TPR_2 repeat protein; KEGG: mlo:mlr7075 similar to trifolitoxin synthesis, TfuA. (629 aa)    
Predicted Functional Partners:
Pden_3054
KEGG: sil:SPO2534 branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein, putative; TC 3.A.1.4.-.
 
     0.598
Pden_4192
KEGG: gvi:glr3599 hypothetical protein.
  
     0.518
Pden_4196
Hypothetical protein; TIGRFAM: uncharacterized domain; PFAM: protein of unknown function DUF181; KEGG: bcn:Bcen_5136 protein of unknown function DUF181.
       0.516
Pden_4195
PFAM: nitroreductase; KEGG: tko:TK0839 NAD(P)H-flavin oxidoreductase.
       0.497
Pden_4197
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ccr:CC3726 molybdopterin biosynthesis protein MoeB.
       0.497
Pden_4198
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: sus:Acid_0877 radical SAM domain protein.
       0.497
Pden_4199
Hypothetical protein.
       0.441
Pden_3051
PFAM: Endoribonuclease L-PSP; KEGG: mlo:mlr1297 hypothetical protein.
  
     0.440
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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