Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Pden_4253ATP:cob(I)alamin adenosyltransferase; PFAM: protein of unknown function DUF336; KEGG: cps:CPS_4893 putative GlcG protein. (141 aa)    
Predicted Functional Partners:
Pden_2549
TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: jan:Jann_0549 cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
   
 0.927
Pden_4251
PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: rme:Rmet_3722 CMP/dCMP deaminase, zinc-binding.
  
    0.696
Pden_4252
PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B5382 major facilitator superfamily MFS_1.
       0.686
Pden_4250
PFAM: Ankyrin; KEGG: bur:Bcep18194_B0071 ankyrin repeat protein.
       0.672
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
  
 0.473
Pden_4254
PFAM: protein of unknown function DUF81; KEGG: rpa:RPA0111 DUF81.
       0.465
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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