Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Pden_4265Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pfl:PFL_3673 transcriptional regulator, GntR family. (256 aa)    
Predicted Functional Partners:
Pden_4272
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: rme:Rmet_4475 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein; TC 3.A.1.4.-.
 
     0.856
Pden_4270
PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B2564 ABC branched chain amino acid family transporter, inner membrane subunit; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
     0.816
Pden_4271
Amino acid/amide ABC transporter membrane protein 1, HAAT family; PFAM: inner-membrane translocator; KEGG: rme:Rmet_4476 inner-membrane translocator; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
     0.813
Pden_4266
MlrC domain protein; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family.
       0.780
Pden_4268
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_4479 ABC transporter related; TC 3.A.1.4.-.
       0.779
Pden_4269
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rme:Rmet_4478 ABC transporter related; TC 3.A.1.4.-.
       0.779
Pden_4267
KEGG: sil:SPO1781 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein.
       0.778
Pden_0470
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: pau:PA14_72890 putative transcriptional regulator.
  
  
 0.735
Pden_3573
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: reu:Reut_C6220 regulatory protein GntR, HTH:GntR, C-terminal.
  
  
 0.730
Pden_0240
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mes:Meso_4461 transcriptional regulator, GntR family.
  
  
 0.722
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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